Biophysics: An Introduction
CHAPTER 1
STRUCTURE AND FUNCTION OF CELLS
The cell (from Latin cella, meaning “small room”) is the basic structural, functional
and biological unit of all known living organisms. Cells are the smallest unit of life that can
replicate independently, and are often called the “building blocks of life”
(http://en.wikipedia.org/wiki/Cell_biology). The cell is the structural integrity, functional.
and hereditary smallest of living creatures in the form of a small space bounded by
membranes and contains a concentrated liquid. In Becker. et al (2000:2) mentioned that the
cell is the basic unit of biology.
Cells consist of a protoplasm enclosed within a membrane, which contains many
biomolecules such as proteins and nucleic acids. Organisms can be classified as unicellular
(consisting of a single cell; including most bacteria) or multicellular (including plants and
animals). While the number of cells in plants and animals varies from species to species,
humans contain about 100 trillion (1014) cells. The cells come from preexisting cells and have
a life of their own in addition to their joint role in the multicellular organism. Most living
things are composed of single cells. or so-called unicellular organisms. such as bacteria and
amoeba. Other living things. including plants. animals. and humans, are multicellular
organisms composed of many specialized cell types with their respective functions Most
plant and animal cells are visible only under the microscope, with dimensions between 1 and
100 micrometres. The human body is composed of more than 1013 cells. Nevertheless. the
whole body of all organisms derived from a single cell division results. For example, the
body of bacteria derived from the parent bacterial cell division, while the bodies of mice
derived from cell division of the fertilized egg parent.
The cell was discovered by Robert Hooke in 1665. The cell theory, first developed in
1839 by Matthias Jakob Schleiden and Theodor Schwann, states that all organisms are
composed of one or more cells, that all cells come from preexisting cells, that vital functions
of an organism occur within cells, and that all cells contain the hereditary information
necessary for regulating cell functions and for transmitting information to the next generation
of cells.[5] Cells emerged on Earth at least 3.5 billion years ago.
Approximately 200 years later, Dutrochet. von Scheleiden. and Schwaan Hook
confirms discovery. In 1824. R.J.H. Dutrochet cells expressed the principle which states that
all animals and plants are composed of cells that stick together by the force of the adhesive.
Then in 1838. M.J. Scheleiden published a book that includes an understanding of the genesis
of plant tissue. Scheleiden finding suggests the presence of nucleoli and cell theory in plants.
Meanwhile next year. T. Schwaan put forward the theory in animal cells. Cell theory states
that living things are composed of cells. The discovery of the cell theory above Durjadin line
with findings in 1835 that found that in the cell there is a viscous substance. which is now
known as protoplasm.
In 1839, Theodor Schwann, who after discussing with Schleiden realized that he had
observed the nucleus of the animal cell as Schleiden studied in plants, suggesting that all
animal parts are also made up of cells. According to him. the universal principle of formation
of various body parts of all organisms is the cell formation. In the mid-19th century, in 1958.
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Biophysics: An Introduction
R. Virchow put forward the theory that corrects the theory of abiogenesis biogenesis.
Biogenesis theory states that all living cells come from cells that already exist. The concept
was popular with Omnis cellula cellulae. Later in the 20th century that many experts find
various types of structures and formations contained within the cell. For example,in 1867, L.
ST. George found the cell organelles are now called – Golgi complex. In 1869. F. Meischer
find nuclein. and in 1887. van Beneden find centrioles.
The cell is the smallest unit of life. All organisms alive today. derived from a stem cell
existing in millions of years ago. These cells undergo a gradual evolution going to adjust to
its environment. Based on these changes. it is now the cell can be grouped into two major
groups. namely prokaryotic cells (prokaryotic) and eukaryotic cells (eukaryotic). Prokaryotic
and eukaryotic term first used by Hans Ris in 1960.
Eukaryotic cells are distinguished from the more primitive prokaryotic cells by the
presence of 1) cytoplasmic membranous organelles, 2) a nuclear membrane (i.e. a true
nucleus), and 3) chromosomal proteins. In this lab we will focus primarily on organelles,
their functions within the cell and how they differ between plant and animal cells.
Figure 1.1. All types of cells( http://mrsgiegler.weebly.com/2/archives/10-2011/1.html)
Important discoveries about cells growing in line with advances in technology and the
discovery of advanced tools. Until now it is known that the structure and cell activity is not as
simple as previously thought. For more details schemes cell development and cell theory can
be seen in the figure below.
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Biophysics: An Introduction
V iew of Aristotle’s philosophy of R.Hook (1665), the term cell
Microscopic observation cork
living things
(Micrographia book)
The use of tools for microscopic The discovery of the microscope by
o bservation object (Euclid, Ptolemy, A. Van Leewenhoek (1674)
J ansen etc.)
CELL CONCEPTS
Mirbel (1802-1808) Dutrochet (1824) Principles
Lamarck (1809) cells have
Plant membranes are of cells united by the
an important function
composed of cell adhesive strength
Th e discovery of the substance Naming the substance of
CELL THEORY
ce ll Durjadin (1835) There is a Purkinje cells (1840), viscous
viscous liquid substance: protoplasm
S cheliden (1838) and Schwaan (1839) Virchow (1858) Theory of Biogenesis
Living things are composed of cells Omnis cellula e cellula
T he discovery The concept of fertilization (fusion The discovery
o f DNA of two pronuklei), Hertwig of cell organel
Figure 1.2. Schemes cell development and cell theory
A. Prokaryotic Cells
Cells that lack a membrane-bound nucleus are called prokaryotes (from the Greek
meaning before nuclei). These cells have few internal structures that are distinguishable
under a microscope. Cells in the monera kingdom such as bacteria and cyanobacteria (also
known as blue-green algae) are prokaryotes. Prokaryotes are single-celled organisms that
are the earliest and most primitive forms of life on earth. As organized in the Three
Domain System, prokaryotes include bacteria and archaeans. Prokaryotes are able to live
and thrive in various types of environments including extreme habitats such as
hydrothermal vents, hot springs, swamps, wetlands, and the guts of animals. Most are
unicellular, but some prokaryotes are multicellular.
Prokaryotic cells are the simplest systems that exhibit all of the signs of life. They are
the smallest types of cell, averaging 2-5 µm in length, which makes them just visible
under the light microscope. Prokaryotic cells differ significantly from eukaryotic cells.
They don’t have a membrane-bound nucleus and instead of having chromosomal DNA,
their genetic information is in a circular loop called a plasmid. Bacterial cells are very
small, roughly the size of an animal mitochondrion (about 1-2µm in diameter and 10 µm
long). Prokaryotic cells feature three major shapes: rod shaped, spherical, and spiral.
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Biophysics: An Introduction
Instead of going through elaborate replication processes like eukaryotes, bacterial cells
divide by binary fission.
((http//www.cellsalive.com/cells)
Figure 1.3. The structure of the bacterial cell.
Bacteria perform many important functions on earth. They serve as decomposers,
agents of fermentation, and play an important role in our own digestive system. Also,
bacteria are involved in many nutrient cycles such as the nitrogen cycle, which restores
nitrate into the soil for plants. Unlike eukaryotic cells that depend on oxygen for their
metabolism, prokaryotic cells enjoy a diverse array of metabolic functions. For example,
some bacteria use sulfur instead of oxygen in their metabolism
(http://library.thinkquest.org/C004535/prokaryotic_cells.html).
Despite their small size, inside each cell there is the complete chemical and
biochemical machinery necessary for growth, reproduction and the acquisition and
utilization of energy. Prokaryotes have a large array of abilities. Some of them live in the
absence of oxygen, some live in extreme conditions of heat or cold, others at the bottom of
oceans where the only source of energy is hot hydrogen sulfide bubbling up from the core
of the earth.
Prokaryotic cells are not as complex as eukaryotic cells. They have no true nucleus
as the DNA is not contained within a membrane or separated from the rest of the cell, but
is coiled up in a region of the cytoplasm called the nucleoid. Using bacteria as our sample
prokaryote, the following structures can be found in bacterial cells
(http://biology.about.com/od/cellanatomy/ss/prokaryotes.htm):
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Biophysics: An Introduction
1. Capsule – A gelatinous capsule is present in some bacteria outside the cell membrane
and cell wall. The capsule may be polysaccharide as in pneumococci, meningococci
or polypeptide as Bacillus anthracis or hyaluronic acid as in streptococci. Capsules
are not marked by normal staining protocols and can be detected by India ink or
methyl blue; which allows for higher contrast between the cells for observation.
Found in some bacterial cells, this additional outer covering protects the cell when it
is engulfed by other organisms, assists in retaining moisture, and helps the cell adhere
to surfaces and nutrients.
2. Cell Wall – Outer covering of most cells that protects the bacterial cell and gives it
shape. The cell wall acts to protect the cell mechanically and chemically from its
environment, and is an additional layer of protection to the cell membrane. Different
types of cell have cell walls made up of different materials; plant cell walls are
primarily made up of pectin, fungi cell walls are made up of chitin and bacteria cell
walls are made up of peptidoglycan.
3. Cytoplasm – A gel-like substance composed mainly of water that also contains
enzymes, salts, cell components, and various organic molecules. The cytoplasm in
prokaryotic cells is a gel-like, yet fluid, substance in which all of the other cellular
components are suspended. Jello for cells. It is very similar to the eukaryotic
cytoplasm, except that it does not contain organelles. Recently, biologists have
discovered that prokaryotic cells have a complex and functional cytoskeleton similar
to that seen in eukaryotic cells.2 The cytoskeleton helps prokaryotic cells divide and
helps the cell maintain its plump, round shape. As is the case in eukaryotic cells, the
cytoskeleton is the framework along which particles in the cell, including proteins,
ribosomes, and small rings of DNA called plasmids, move around.
4. Cell Membrane or Plasma Membrane – Surrounds the cell’s cytoplasm and
regulates the flow of substances in and out of the cell. Prokaryotic cells can have
multiple plasma membranes. Prokaryotes known as “gram-negative bacteria,” for
example, often have two plasma membranes with a space between them known as the
periplasm. Just inside the cell wall, the plasma membrane is a selective barrier which
regulates the passage of materials to from the cell. It is through this membrane that a
cell must exchange food molecules, gases and other vital ingredients. Composed of
phospholipid and protein membranes form thin, flexible, self-sealing, highly selective
barriers between the inside of the cell and the outside world. As in all cells, the
plasma membrane in prokaryotic cells is responsible for controlling what gets into and
out of the cell. A series of proteins stuck in the membrane (poor fellas) also aid
prokaryotic cells in communicating with the surrounding environment. Among other
things, this communication can include sending and receiving chemical signals from
other bacteria and interacting with the cells of eukaryotic organisms during the
process of infection. Infection is the kind of thing that you don’t want prokaryotes
doing to you. Keep in mind that the plasma membrane is universal to all cells,
prokaryotic and eukaryotic. Because this cellular component is so important and so
common, it is addressed in great detail in its own In Depth subsection.
The genetic information on the plasmids is transferrable between cells, allowing
prokaryotes to share such abilities as antibiotic resistance. Humans have discovered
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Biophysics: An Introduction
that prokaryotic plasmids can be genetically engineered. Today, they are isolated,
changed to carry other interesting information and then reintroduced into new cells. In
this way unique and usefull little bacterial factories can be designed, created and put
to work.
5. Fimbriae (pili) – Hair-like structures on the surface of the cell that attach to other
bacterial cells. Shorter pili called fimbriae help bacteria attach to surfaces. Fimbriae
are responsible for attachment of bacteria to specific receptors of human cell
(adherence). There are special types of pili called (sex pili) involved in conjunction.
6. Flagella – Long, whip-like protrusion that aids in cellular locomotion. Flagella are
organelles for cellular mobility. The bacterial flagellum stretches from cytoplasm
through the cell membrane(s) and extrudes through the cell wall. They are long and
thick thread-like appendages, protein in nature. Are most commonly found in bacteria
cells but are found in animal cells as well. These are strands of protein that pass
though the outer surface of the cell body either either singly or in tufts. Energy
provided by the plasma membrane rotates the flagellum by means of a unique rotating
‘joint’ and this in turn moves the bacterium through its liquid world. Prokaryotic
flagella are very different from similar looking structures used by eukaryotic cells.
7. Ribosomes – Cell structures responsible for protein production. Prokaryotic
ribosomes are smaller and have a slightly different shape and composition than those
found in eukaryotic cells. Bacterial ribosomes, for instance, have about half of the
amount of ribosomal RNA (rRNA) and one third fewer ribosomal proteins (53 vs.
~83) than eukaryotic ribosomes have.3 Despite these differences, the function of the
prokaryotic ribosome is virtually identical to the eukaryotic version. Just like in
eukaryotic cells, prokaryotic ribosomes build proteins by translating messages sent
from DNA.
8. Plasmids – Gene carrying, circular DNA structures that are not involved in
reproduction.
9. Nucleiod Region – Area of the cytoplasm that contains the single bacterial DNA
molecule. All prokaryotic cells contain large quantities of genetic material in the
form of DNA and RNA. Because prokaryotic cells, by definition, do not have a
nucleus, the single large circular strand of DNA containing most of the genes needed
for cell growth, survival, and reproduction is found in the cytoplasm. The DNA tends
to look like a mess of string in the middle of the cell:
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Biophysics: An Introduction
Figure 1.4. Transmission electron micrograph image (www.ncbi.nlm.nih.gov)
Usually, the DNA is spread throughout the entire cell, where it is readily accessible to
be transcribed into messenger RNA (mRNA) that is immediately translated by ribosomes
into protein. Sometimes, when biologists prepare prokaryotic cells for viewing under a
microscope, the DNA will condense in one part of the cell producing a darkened area
called a nucleoid (http://www.shmoop.com/biology-cells/prokaryotic-cells.html).
As in eukaryotic cells, the prokaryotic chromosome is intimately associated with
special proteins involved in maintaining the chromosomal structure and regulating gene
expression. In addition to a single large piece of chromosomal DNA, many prokaryotic
cells also contain small pieces of DNA called plasmids. These circular rings of DNA are
replicated independently of the chromosome and can be transferred from one prokaryotic
cell to another through pili, which are small projections of the cell membrane that can
form physical channels with the pili of adjacent cells.
The transfer of plasmids between one cell and another is often referred to as “bacterial
sex.” Sounds dirty. The genes for antibiotic resistance, or the gradual ineffectiveness of
antibiotics in populations, are often carried on plasmids. If these plasmids get transferred
from resistant cells to nonresistant cells, bacterial infection in populations can become
much harder to control. For example, it was recently learned that the superbug MRSA, or
multidrug-resistant Staphylococcus aureus, received some of its drug-resistance genes on
plasmids.
Prokaryotic cells are often viewed as “simpler” or “less complex” than eukaryotic
cells. In some ways, this is true: prokaryotic cells usually have fewer visible structures,
and the structures they do have are smaller than those seen in eukaryotic cells. Don’t be
fooled, however, into thinking that just because prokaryotic cells seem “simple” that they
are somehow inferior to or lower than eukaryotic cells and organisms. Making this
assumption can get you into some serious trouble.
Biologists are now learning that bacteria are able to communicate and collaborate with
one another on a level of complexity that rivals any communication system ever developed
by humans. Prokaryotes showed you, Facebook and Twitter. In addition, some Archaean
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Biophysics: An Introduction
cells are able to thrive in environments so hostile that no eukaryotic cell or organism
would survive for more than a few seconds.
Prokaryotic cells are also able to pull off stuff that eukaryotic cells could only dream
of, in part because of their increased simplicity. Being bigger and more complex is not
always better. These cells and organisms are just as adapted to their local conditions as
any eukaryote, and in that sense, are just as “evolved” as any other living organism on
Earth.
Reproduction in prokaryotic cells is by binary fission; a process of growth,
enlargment and division. The DNA molecule of the cell is accurately duplicated and the
two copies separated form each other by movement of the cell membrane to which they
are attached. The cell then divides into two smaller but identical cells and each begins its
own independent existence.
Figure 1.5. Reproduction in prokaryotic cells is by binary fission
(www.brooklyn.cuny.edu/bc/ahp/LAD/C5/C5_Prokary.html)
B. Eukaryotic Cells
Eukaryotes are organisms whose cells are organized into complex structures by
internal membranes and a cytoskeleton. The most characteristic membrane bound structure
is the nucleus. This feature gives them their name, (also spelled “eucaryote,”) which comes
from the Greek ευ, meaning good/true, and κάρυον, meaning nut, referring to the nucleus.
Animals, plants, fungi, and protists are eukaryotes. Eukaryotes is wrapped by a nuclear
membrane so that it does not mix with the cytoplasm. The most striking difference from
prokaryotic cells is the true nucleus that encloses most of the cell’s DNA so that the DNA
is stored in a different compartment of the cytoplasm.
To better understand the models shown below eukaryotic cells. in the form of three-
dimensional and two- dimensional. Parts of the cell are described below in particular will
be discussed further in this learning activity. While the particulars of the cell membrane
will be discussed in more detail in Chapter 3.
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Biophysics: An Introduction
Figure 1.6.
Eukaryotic Cells models in three dimensions (animal cells).
Figure 1.7. Eukaryotic cell model in two dimensions.
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Biophysics: An Introduction
Table 1.1. Comparison of features of prokaryotic and eukaryotic cells
(http://en.wikipedia.org/wiki/Cell_biology)
Prokaryotes Eukaryotes
Typical
bacteria, archaea protists, fungi, plants, animals
organisms
Typical size ~ 1–5 µm[9] ~ 10–100 µm[9]
nucleoid region; no
Type of nucleus true nucleus with double membrane
true nucleus
linear molecules (chromosomes) with histone
DNA circular (usually)
proteins
RNA/protein coupled in the RNA synthesis in the nucleus
synthesis cytoplasm protein synthesis in the cytoplasm
Ribosomes 50S and 30S 60S and 40S
Cytoplasmic highly structured by endomembranes and a
very few structures
structure cytoskeleton
flagella made of flagella and cilia containing microtubules;
Cell movement
flagellin lamellipodia and filopodia containing actin
one to several thousand (though some lack
Mitochondria None
mitochondria)
Chloroplasts None in algae and plants
single cells, colonies, higher multicellular
Organization usually single cells
organisms with specialized cells
Binary fission Mitosis (fission or budding)
Cell division
(simple division) Meiosis
In addition we can also see the difference between plant and animal cells by observing
the models listed below.
Figure 1.8. Plant cells (http.www.cellsalive.com/cells.)
Figure 1.9. Animal cells (http.www.cellsalive.com/cells)
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Biophysics: An Introduction
A cell structure is illustrated in Figure 1.9. Plant cells and animal cells Figure 1.6. which
describes the shape of various types of cells.
If we look at the plants and animals have a very big difference. where plants can not
move with such active animals. This is because the shape of plant cells are rigid so it is not
flexible. in contrast to animal cells that are flexible and can change shape. Aside from the
shape. the differences plant cells and animal cells can also be differentiated from the
following:
Table 1.2. Differences as plant and animal cells
Plant Cells Animal Cells
1. Plant cells Animal cells larger than 1. Animal cells are smaller than plant cell
2. Do not have the lysosome 2. Not having plastids
3. Do not have the centrosome 3. Do not have cell walls
4. Have a cell wall and cell membrane 4. Having lysosomes
5. Generally have plastids 5. Having centrosome
6. Have a fixed shape 6. Have no fixed shape
7. Has a large vacuole size. Lot 7. Not having vakuala (although there
also have vacuoles but small size)
There are two main parts of the cell. namely: core and its contents are often called
nucleoplasm. and the remaining part is called the cytoplasm. Nucleus and cytoplasm were
surrounded by a membrane. as well as smaller parts like mithokhondria and Golgi bodies.
Broadly speaking, the structure and function of each cell component is as follows
1. Nuclei
The cell nucleus consists of a nuclear membrane, nucleoplasm, nucleolus and
chromosomes. The nuclear membrane is a double membrane that has four phospholipid
layers and large pores through which materials pass. It also contains a viscous liquid
known as the nucleoplasm. The nucleus is the most prominent organelle in the cell. This
small organ is separated from the cytoplasm (plasma cells) by wrapping which consists of
two membranes. the inner membrane and outer membrane. The nucleus contains the
genetic material that is Deoxy Ribonucleic Acid (ADN) is encased in a nuclear membrane.
All chromosomal DNA is stored in the nucleus. packed in chromatin fibers thanks to its
alliance with the histone proteins that same mass. Fill nucleus communicates with the
cytosol through the holes in the wrapper called pores nucleus. Nucleoli in the nucleus
there is a place for ribosoma producing cells.
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Biophysics: An Introduction
Figure 1.10. The structure of the nucleus (micro.magnet.fsu.edu).
2. Plasma membrane
Cell membranes are found in animal cells whereas cell walls are found in plant
cells. Cell walls and membranes have similar functions. Like a city perimeter, cell
membranes surround the cell and have the ability to regulate entrance and exit of
substances, thereby maintaining internal balance. These membranes also protect the
inner cell from outside forces. Cell walls, as the city analogy implies, are much stronger
than cell membranes and protect cells from lysing (exploding) in extremely hypotonic
(diluted) solutionsMembrane is very thin and is selectively permeable to the size of 7.5-
10 nm. The plasma membrane is a lipid double layer (bilayer) is the molecular structure
of two layers. Lipids are important are glycolipids and phospholipids and little chance
of containing cholesterol. The structure of the plasma membrane of cells such support
to be able to take advantage of changes in ion permeability control at the plasma
membrane of cells for communication purposes. In addition, it also serves as a
protective organelles within the cell.
Different from the plasma membrane of eukaryotic cells, the plasma membrane
in eukaryotic cells can develop specialized capabilities or organelles. In eukaryotic
cells, which do not have mitochondria. the plasma membrane is also in charge of
implementing energy metabolism. The difference is what causes that in eukaryotic
cells. the plasma membrane is not formed mesosom.
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Biophysics: An Introduction
Figure 1.11. Plasma Membrane
3. The cell organelles
Organelles are parts of the cell which are adapted and/or specialized for carrying
out one or more vital functions, analogous to the organs of the human body (such as
the heart, lung, and kidney, with each organ performing a different function). Both
eukaryotic and prokaryotic cells have organelles, but prokaryotic organelles are
generally simpler and are not membrane-bound.
There are several types of organelles in a cell. Some (such as the nucleus and
golgi apparatus) are typically solitary, while others (such as mitochondria,
chloroplasts, peroxisomes and lysosomes) can be numerous (hundreds to thousands).
The cytosol is the gelatinous fluid that fills the cell and surrounds the organelles.
The number of organelles in the cytoplasm of eukaryotic cells are more
complex than prokaryotic cells. The organelles eg mitochondria. endoplasmic
reticulum. nucleus. ribosomes. microtubules. and others.
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Biophysics: An Introduction
Figure 1.12. Organelles Cell.
a. Endoplasmic Reticulum (Endoplasmic reticulum)
There are two types of endoplasmic reticulum (ER) – Smooth ER and
Rough ER. This extensive network makes up approximately one half of all
membranous tissue of the cell and is the site of membrane and protein synthesis.
The ER system is much like a road system along which industry can be found.
Goods are manufactured and shipped to needed areas via the road system. Rough
ER is named for the presence of ribosomes along its membrane and is the source
of proteins. Smooth ER lacks ribosomes and is responsible for lipid synthesis and
processes a variety of metabolic processes such as drug detoxification.
Endoplasmic reticulum (ER) membrane is a maze so much so that it covers
more than half the total membrane in eukaryotic cells. The word ` endoplasmic
means within the cytoplasm ‘ and reticulum derived from the Latin word which
means the network. RE consists of a network of tubules and membrane bubbles
called sisternal or lumen. ER membrane separates the internal space. namely the
space sisternal from the cytosol. And because the ER membrane continuous with
the nuclear envelope. the room between the two membrane sheath was continuous
with the RE sisternal room.
In general, the RE has the following functions;
1) Performers synthetic metabolic activity. because it contains a variety of
enzymes.
2) denaturation and elongation of fatty acids.
3) Providing a wide surface for enzymatic reactions.
4) An ultra- structural skeleton that provides the mechanical strength of the cell.
the cytoplasm koloidalnya matrix.
5) As a place of exchange of molecules through a process of osmosis. diffusion
and active transport to the ER membrane and eksosistosis.
6) Establish a new core wrap on cell division.
7) cell protection function for the ER membrane is able to eliminate the toxic
effects of substances through the detoxification process.
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Biophysics: An Introduction
The Science of Biology. 4th Edition. by Sinauer Associates. www.sinauer.com)
and WH Freeman (www.whfreeman.com).
Figure 1.13. Endoplasmic reticulum.
(www.DennisKunkel.com.)
Figure 1.14. Photos using Scanning Electron Microscopy of reticulum
endoplasmic and the ribosomes. (TEM x 61.560).
b. Golgi apparatus (Golgi Apparatus/Golgi Complexes)
Like a post office, the golgi apparatus is used for shipping those goods created
by the ER and ribosomes to the rest of cell. These organelles were first discovered
by Camilio Golgi. a scientist from Italy. Golgi apparatus is common on plant and
animal cells. In animal cells are 10-20 Golgi apparatus. As with plants that have
hundreds of Golgi bodies in each cell. Golgi apparatus has a length of about 1-3 lm
and a height of about 0.5 lm. Golgi apparatus including cell vacuolar system and
there are no ribosomes. On the polar structure of cells. single Golgi apparatus.
large and occupies at the core and at the poles of the cell. for example in the
glandular cells eksokim prankeas. In liver cells in a cell. there are about 50 that
form the Golgi complex varies between cells with one another. Golgi apparatus
consists of a group of membrane bounded flattened bag called saccula. Near
saccula contained secretory vesicles form spherical bubbles. The Golgi apparatus
in plants called diktiosom. In the manufacture of polysaccharide diktiosom occurs
in the form of cellulose that is used as the building blocks of the cell wall.
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Biophysics: An Introduction
Based on morphological observations and in situ cytochemistry and
biochemical studies indicate that the Golgi apparatus is involved in a large number
of cell activities include assembly of proteins and lipids high carbohydrate or better
known as glycosylation process. recovery of the cell membrane. and secretion.
In general, the function of the Golgi apparatus. among others:
1) forming cell walls in plants
2) produces lysosomes
3) forming acrosome in spermatozoa containing enzymes to break down the cell
wall of the egg.
4) Places such as mucus synthesis of polysaccharides. cellulose. hemicellulose.
and pectin (constituent of plant cell walls).
5) Forming the plasma membrane.
6) Forming bag to wrap secretion of substances to be issued a cell. such as
proteins. glycoproteins. carbohydrates. and fats.
Figure 1.15a. EM picture of a golgi Figure 1.15.b. Artist rendition of the
Apparatus Golgi Complex
Figure 1.16. Golgi apparatus.
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Biophysics: An Introduction
c. Mitochondria
Mitochondria are found in both plant and animal cells and is the site of cellular
respiration. Through this process that will be covered in the Photosynthesis and
Respiration lab ATP is created which is used for energy by the cell. The size and
shape of mitochondria. as well as the numbers in the cells. tissues and varies
according to the physiological state of the cell by. By using visible light
microscopy oval mitochondria. but mitochondria can also dumbbell -shaped.
spherical. or racket. with a diameter of 0.5-1.0 and length up to 7 lm. Due to the
very small size of new structures can be viewed using an electron microscope.
Mitochondria contain small amounts of DNA. RNA and ribosomes. Mitochondrial
DNA provide the password for the synthesis of certain specific proteins on the
inner membrane. Most mitochondrial proteins are encoded by nuclear DNA and
synthesized by ribosomes are present in the cytosol or in the endoplasmic
reticulum. This shows that there is a connection / transfer of information from
DNA to the nucleus of mitochondrial later emerged from DNA found in the
mitochondria themselves.
Figure 1.17. Electron microscope picture of a mitochondria
d. Chloroplasts
Place photosynthesis is high organ subcellular structure called chloroplasts.
The result of chemical changes in photosynthesis are CO2 and H2O into
carbohydrates. Carbohydrates are stored and produced as a result of photosynthesis
can be seen as grains of starch.
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Biophysics: An Introduction
Figure 1.18. Cloroplast
4. In the membrane
Eukaryotic cells typically have a much larger volume than prokaryotic cells.
typically a thousand times or more. Material or any material of cells it contains many
times more. For example that the human body cells contain DNA that is a thousand
times more than that of bacteria.
Membranes in various organelles such as the mitochondria membrane. vacuole
membrane (in plant cells). the Golgi apparatus and the other is the venue for
important reactions. Due to the addition of the cell volume must be balanced with the
addition of the cell surface area by maintaining the ratio of surface area to volume
ratio. This explains why all eukaryotic cells have many characteristics of the basic
form and complexity of the membrane in the form of:
a. In the endoplasmic reticulum membrane that forms a maze -like compartments.
b. Golgi membranes in the body that make up the pile of bags deflated play a role in
the conversion of product molecules from the endoplasmic reticulum.
c. Lysosomal membrane of cells that contains digestive enzymes.
d. Peroxisome membrane wrapping where the formation and decomposition of
H2O2 are reactive and dangerous during the oxidation of a variety of molecules
by O2.
e. Vacuole membrane (tonoplas) in plant cells that form small bubbles and large
cavity filled with fluid.
With the cell structure located next to the cell. can provide adequate surface area
corresponding to the large volume. namely that between membrane-bound
compartments within the cell and outside the cell environment occurs an exchange
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Biophysics: An Introduction
mechanisms (transport) is relentless. The mechanism of endocytosis and exocytosis is.
which only occurs in eukaryotic cells.
In endocytosis. the parts forming the outer membrane curvature toward the later
rounded and separated into bubbles of membrane-bound cytoplasm and contain
substances that come from outside of cells and molecules that have been previously
absorbed on the surface of cells.
Exocytosis is the reverse process of endocytosis. In this case. bubbles encased in
a cell membrane. referring to the plasma membrane and release their contents into the
outer environment. That way. the membranes around the compartment which is
located deep within the cell to function effectively increase the cell surface area for
the exchange of materials from outside.
5. Cytoskeleton
The cytoskeleton acts to organize and maintain the cell’s shape; anchors
organelles in place; helps during endocytosis, the uptake of external materials by a cell,
and cytokinesis, the separation of daughter cells after cell division; and moves parts of
the cell in processes of growth and mobility. The eukaryotic cytoskeleton is composed
of microfilaments, intermediate filaments and microtubules. There are a great number
of proteins associated with them, each controlling a cell’s structure by directing,
bundling, and aligning filaments. The prokaryotic cytoskeleton is less well-studied but
is involved in the maintenance of cell shape, polarity and cytokinesis.
The cyotoskeleton represents the cell’s skeleton. Like the bony skeletons that give
us stability, the cytoskeleton gives our cells shape, strength, and the ability to move, but
it does much more than that. The cytoskeleton is made up of three types of fibers that
constantly shrink and grow to meet the needs of the cell: microtubules, microfilaments,
and actin filaments. Each type of fiber looks, feels, and functions differently.
Microtubules consists of a strong protein called tubulin and they are the ‘heavy lifters’
of the cytoskeleton. They do the tough physical labor of separating duplicate
chromosomes when cells copy themselves and serve as sturdy railway tracks on which
countless molecules and materials shuttle to and fro. They also hold the ER and Golgi
neatly in stacks and form the main component of flagella and cilia.
Figure 1.19. Cytoskeleton (www.sinauer.com).
All eukaryotic cells are equipped with a cell skeleton (cytoskeleton) that
functions give it shape. motility and ability to regulate the organelles and organelles
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Biophysics: An Introduction
move from one part of the cell to another. This is caused by the growing size of a cell.
the more complicated and more specialized structures in it.Thus the greater the
necessity to keep these structures remain as they are and adjust their movements.
Cell skeleton is composed of a network of protein filaments. Three of the most
important of which are actin filaments (also called microfilaments). intermediate
filaments. and Microtubules.
Microfilaments are long thin fibers with a diameter of 5-6 nm. Composed of a
protein called actin. Many microfilaments form a collection or network at various
places in the cell. That coupled with the presence of cell motion. When an animal cell
divides into two. for example. a beam forming microfilaments and separates the two
daughter cells.
In many cells. the cytoplasm moved and this phenomenon called cytoplasmic
flow. Motion depends on the presence of microfilaments. Microfilaments is also a
feature that is important in the cell move and change shape. This does not just apply to
the free movement of independent cells as well as amoeba. but also in most animal cells
during embryo formation.
Figure 1.20. Scheme of cytoskeleton.
Cytoplasmic intermediate filament is a long fiber with a diameter of about 10 nm.
Called intermediate because its diameter is larger than the diameter of microfilaments
(6 nm) and smaller than the diameter of microtubules (25 nm) and the filaments ‘ thick ‘
(15 nm) in skeletal muscle fibers. Intermediate filaments composed of fibrous protein
molecules. Intermedia is a hollow filament yarn consisting of five protofilamen. parallel
to one another and form a circle. Intermediate filaments found in many cells that often
get mechanical stresses. such as cell epithelium. the axons of nerve cells or smooth
muscle cells.
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Biophysics: An Introduction
Cylindrical microtubule protein is found in most animal and plant cells. There are
two kinds of – tubulin and – tubulin. Each with a molecular weight of about 55,000
daltons. Microtubules also play a very important role in cell division. Successful cell
division requires proper distribution of chromosomes into each daughter cell. Each
chromosome moves to the goal ended in a bundle of microtubules. Microtubules are
also used in the formation of centrioles. basal bodies and flagella.
There are two groups of microtubules: 1) microtubules are stabilized microtubules can
be preserved with a fixative solution of any sort. for example: OsO4. MnO4. or
aldehydes at any temperature. 2) microtubules are labile microtubules can be preserved
only by the solution of Figure 1.16. Aldehyde fixative microtubules and at about 4 ° C.
Figure 1.21a. Microtubules.
Figure 1.16b. Microtubules parts.
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Biophysics: An Introduction
Table 1.3. Comparison between the properties of microtubules. microfilaments and
intermediate filaments.
The nature /
Microtubule Intermedia filaments Microfilaments
Signs
Structure Hollow with Hollow with walls Incompressible (solid)
wall consists of 13 consisting of 4-5 consists of polymeric
protofilamen rotofilamen actin (Actin – F)
Midline (nm) 24 10 7
Unity α and β tubulin 5 kinds of proteins Actin –G
monomer
ATP-ase Located in dinein —- —
activity
function The ability of the combine Berperan dalam
movement in unity contraction in kontraksi otot
eukaryotes. the muscle cells Plays a role in muscle
Kromosoma contraction
movement. changes in cell shape of
Intra- cell material protoplasm
movement sitokenesis.
Maintaining cell
shape.
EXERCISE
To improve your understanding of the material above, do the exercises below!
1) Explain the four main parts of a prokaryotic cell structure and function with each
one!
2) Explain briefly the difference between animal cells and plant cells ?
3) Explain how the transport mechanism in eukaryotic cells ?
4) Explain briefly how the function of the Golgi apparatus (Golgi apparatus) in a cell !
5) Briefly describe the difference between stable microtubules and microtubule
instability!
Instructions to Answer Exercise
If you have difficulty in answering the questions above consider the answers below as a
reference.
1) In general, prokaryotic cells have four main parts to the structure and function of each
part is as follows: (1) the cell wall. which consists of a variety of organic materials.
such as cellulose. hemicellulose. and chitin. its function is to give a particular shape to
the cells. as a powerful protector. also to regulate the entry and exit of chemicals into
the cell. (2) the plasma membrane is wrapping the protoplasm and is often referred to
plasmalema or hyaline layer. composed of proteins and lipids. In certain places the
plasma membrane folds and form a building called the mesosoma. Mesosoma often
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Biophysics: An Introduction
called kondrioid which acts as a regulator for the division and photosynthesis
photosynthetic bacteria. (3) is often called the protoplasm or cytoplasm of plasma cells.
is a colloid that contains a lot of carbohydrates. proteins. enzymes. sulfur. calcium
carbonate and volutin which contains ribonucleic acid (ARN) and easy to suck the color
is alkaline. (4) the flagella. the structure in the form of a rope coming out of the surface
of the cell. the cell is able to move to move. this tool is derived from the basal granules
found in the cytoplasm. in the middle there is a filament consisting of compounds
protein called flagelin.
2) Plants and animals have a very big difference. where plants can not move with such
active animals. This is because the shape of plant cells are rigid so it is not flexible. in
contrast to animal cells that are flexible and can change shape. Aside from the shape.
the differences plant cells and animal cells can also be differentiated from the
following:
Plant Cells Animal Cells
1. Plant cells Animal cells larger than 8. Animal cells are smaller than plant cell
2. Do not have the lysosome 9. Not having plastids
3. Do not have the centrosome 10. Do not have cell walls
4. Have a cell wall and cell membrane 11. Having lysosomes
5. Generally have plastids 12. Having centrosome
6. Have a fixed shape 13. Have no fixed shape
7. Has a large vacuole size. Lot 14. Not having vakuala (although there
also have vacuoles but small size)
3) The transport mechanism in eukaryotic cells is endocytosis and exocytosis. In
endocytosis. the parts forming the outer membrane curvature toward the later rounded
and separated into bubbles of membrane-bound cytoplasm and contain substances that
come from outside of cells and molecules that have been previously absorbed on the
surface of cells. While exocytosis is the reverse process of endocytosis. In this case.
bubbles encased in a cell membrane. fused with the plasma membrane and release their
contents into the outer environment. That way. the membranes around the compartment
which is located deep within the cell to function effectively increase the cell surface
area for the exchange of materials from outside.
4) Golgi apparatus is involved in a large number of cell activities include assembly of
proteins and lipids high carbohydrate or better known as glycosylation process.
recovery of the cell membrane. and secretion.
In general, the function of the Golgi apparatus. among others:
a) forming cell walls in plants ;
b) produces lysosomes ;
c) forming the sperm acrosome contains enzymes to break down the cell wall of the
egg.
d) The synthesis of polysaccharides such as mucus. cellulose. hemicellulose. and
pectin (constituent of plant cell walls).
e) Establish the plasma membrane.
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Biophysics: An Introduction
f) Establish bag to wrap the secretion of substances to be issued a cell. such as
proteins. glycoproteins. carbohydrates. and fats.
5) Stable microtubules. the microtubules can be preserved with a fixative solution of any
sort. for example: OsO4. MnO4. or aldehydes at any temperature. Microtubules are
labile microtubules can be preserved only by the aldehyde fixative solution and at about
4° C.
RESUME
The cell is the structural integrity. functional. and hereditary smallest of living
creatures in the form of a small space bounded by membranes and contains a dense fluid.
the cell is the basic unit of biology. Biogenesis theory states that all living cells come from
cells that already exist. The concept was popular with Omnis cellula e cellula. Cells can be
grouped into two major groups. namely prokaryotic cells (prokaryotic) and eukaryotic cells
(eukaryotic).
Prokaryotic cells are cells that do not have nuclear membrane. this causes the nucleus
mixed or hold a direct relationship with the cytoplasm. The size of prokaryotic cells is very
small. ie 1-10 lm. Examples of prokaryotic cells is the mycoplasma. bacteria and algae
blue. In general, prokaryotic cells have four main parts to that: the cell wall. plasma
membrane. cytoplasm. and flagella.
Is a eukaryotic cell with a true nucleus. This cell is wrapped by a nuclear membrane
so that it does not mix with the cytoplasm. There are two main parts of the cell. namely:
core and its contents are often called nucleoplasm. and the remaining part is called the
cytoplasm. Nucleus and cytoplasm were surrounded by a membrane. as well as smaller
parts such as mitochondria and Golgi bodies.
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